gg_GWAS_Hits — gg_GWAS_Hits • gwaspr

Creates a summary GWAS plot of significant associations.

Usage

gg_GWAS_Hits(
  xx,
  myG,
  myTs,
  myR = 2e+06,
  myTitle = "",
  sigMin = 0,
  myCV = NULL,
  vlines = NULL,
  vline.colors = rep("red", length(vlines))
)

Arguments

xx: Table of significant GWAS results. See ?table_GWAS_Results().
myG: Genotype data.
myTs: List of traits to use.
myR: Range for binning GWAS hits.
myTitle: Title for horizontal facet.
sigMin: Minimum number of hits to plot.
myCV: (optional) for filtering if you have a "CV" column.
vlines: Markers to be labelled with a vertical red line.
vline.colors: colors for each vertical line.

Value

A GWAS Hits plot.