gwaspr

gwaspr: an R package for plotting GWAS results from the GAPIT package

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Instal gwaspr

devtools::install_github("derekmichaelwright/gwaspr")

library(gwaspr)

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github

• github link: https://github.com/derekmichaelwright/gwaspr/

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Tutorial

• dblogr GWAS Tutorial: https://derekmichaelwright.github.io/dblogr/academic/gwas_tutorial/
• Phenotype data (gwaspr_myY.csv)
• Covariate data (gwaspr_myCV.csv)
• Genotype data (gwaspr_myG_hmp.zip)

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GAPIT

GAPIT: and R package for performing Genome Wide Association Studies (GWAS)

• GAPIT Website: https://www.maizegenetics.net/gapit
• GAPIT github: https://github.com/jiabowang/GAPIT

devtools::install_github("jiabowang/GAPIT")
library(GAPIT)

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Dependancies

tidyverse, ggpubr, ggbeeswarm, ggrepel, ggtext, plotly, htmlwidgets

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Example plots

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