gg_Manhattan_Zoom — gg_Manhattan_Zoom • gwaspr

Creates a manhattan plot zoomed in to a particular region.

Usage

gg_Manhattan_Zoom(
  folder = "GWAS_Results/",
  trait = list_Traits(folder)[1],
  chrom,
  pos1,
  pos2,
  title = trait,
  markers = NULL,
  labels = markers,
  vlines = markers,
  vline.colors = "red",
  models = c("MLM", "FarmCPU", "BLINK", "MLMM", "GLM", "CMLM", "SUPER")
)

Arguments

folder: Folder containing GWAS results.
trait: The trait to read.
chrom: Chromosome to plot.
pos1: Start position on chromosome.
pos2: End position on chromosome.
title: A title for the plot.
markers: Markers to be labelled.
labels: Labels to be used for markers.
vlines: Markers which will be used as a location for a vertical lines.
vline.colors: colors for each vertical line.
models: Models to read.

Value

A manhattan plot.