list_Top_Markers

Finds the markers with the highest association on each chromosome.

Usage

list_Top_Markers(
  folder = "GWAS_Results/",
  traits = list_Traits(folder),
  models = c("MLM", "FarmCPU", "BLINK", "MLMM", "GLM", "CMLM", "SUPER"),
  threshold = 5,
  chroms = 1:50,
  n = 3
)

Arguments

folder

Folder containing GWAS results.

traits

GWAS trait.

models

GWAS models to include.

threshold

filters results with -log10(p) below threshold.

chroms

Chromosomes to include.

n

Number per trait and model.

Value

Table of top results.