gg_LDHeatmap — gg_LDheatmap • gwaspr

Creates a manhattan plot.

Usage

gg_LDheatmap(
  xg = myG,
  chr = 6,
  pos1 = 0,
  pos2 = 6e+06,
  myMs = NULL,
  myTitle = NULL,
  axisTextSize = NULL,
  nameTrim = NULL
)

Arguments

chr: Chromosome to plot.
pos1: Start position within the selected chromosome.
pos2: End position within the selected chromosome.
myMs: Markers to highlight within the plot.
myTitle: Title for the plot.
axisTextSize: Text size for the axis labels (genotype names).
nameTrim: String used to trim marker names.
xG: GWAS genotype object. Note: needs to be in hapmap format.

Value

A LD Heatmap plot.