Usage
gg_Marker_Bar(
xG,
xY,
traits,
markers,
marker.colors = gwaspr_Colors,
plot.histogram = T,
plot.density = T,
plot.counts = T,
myncol = NULL,
line.color = F,
title = NULL,
subtitle = paste(markers, collapse = "\n"),
asfactor = F
)Arguments
- xG
GWAS genotype object. Note: needs to be in hapmap format.
- xY
GWAS phenotype object.
- traits
Traits to plot.
- markers
Markers to plot.
- marker.colors
Color palette.
- plot.histogram
Logical, if true will plot histogram bars.
- plot.density
Logical, if true will plot density bands.
- plot.counts
Logical, if true will make a plot of counts, if false will make a density plot.
- myncol
Number of columns for facetting when plotting multiple traits.
- line.color
Color
- title
Title for the plot.
- subtitle
Subtile for the plot. Defaults to the list of markers.
- asfactor
Logical, whether or not to plot as a factor or numeric.