gg_Marker — gg_Marker_Bar • gwaspr

Creates a marker plot with myG and myY objects.

Usage

gg_Marker_Bar(
  xG,
  xY,
  traits,
  markers,
  marker.colors = c("darkgreen", "darkgoldenrod3", "darkred", "steelblue4",
    "darkslategray", "maroon4", "purple4", "darkblue"),
  plot.histogram = T,
  plot.density = T,
  plot.counts = F,
  myncol = NULL,
  line.color = F
)

Arguments

xG: GWAS genotype object. Note: needs to be in hapmap format.
xY: GWAS phenotype object.
traits: Traits to plot.
markers: Markers to plot.
marker.colors: Color palette.
plot.histogram: Logical, if true will plot histogram bars.
plot.density: Logical, if true will plot density bands.
plot.counts: Logical, if true will make a plot of counts, if false will make a density plot.
myncol: number of columns for facetting.

Value

Marker plot.