gg_Marker — gg_Marker_Box • gwaspr

Creates a marker plot with myG and myY objects.

Usage

gg_Marker_Box(
  xG,
  xY,
  trait,
  markers,
  box.width = 0.1,
  points = T,
  violin = T,
  marker.colors = c("darkgreen", "darkgoldenrod3", "darkred", "steelblue4",
    "darkslategray", "maroon4", "purple4", "darkblue")
)

Arguments

xG: GWAS genotype object. Note: needs to be in hapmap format.
xY: GWAS phenotype object.
trait: Trait to plot.
markers: Markers to plot.
box.width: width for the boxplot.
points: Logical, whether or not to plot points.
violin: Logical, whether or not to plot violin.
marker.colors: Color palette.

Value

Marker plot.