Usage
gg_Marker_Pie(
xG,
xY,
trait,
trait.label = trait,
trait.levels = NULL,
markers,
marker.colors = gwaspr_Colors,
remove.hets = T,
title = NULL,
subtitle = paste(markers, collapse = "\n"),
ncol = NULL,
legend.rows = 1,
removeHets = T,
groupByTrait = F
)Arguments
- xG
GWAS genotype object. Note: needs to be in hapmap format.
- xY
GWAS phenotype object.
- trait
Trait to plot.
- trait.label
Label for the trait.
- trait.levels
Factor levels for the trait.
- markers
Markers to plot.
- marker.colors
Color palette.
- remove.hets
Logical, Whether to remove hets or not. advised if plotting multiple markers.
- title
Title for the plot.
- subtitle
Subtitle for the plot. Defaults to the list of markers.
- ncol
number of columns for facetting.
- legend.rows
number of rows in legend.
- groupByTrait
Logical, if TRUE, will make pies of each trait instead of each marker.