gg_QTL_Summary — gg_QTL_Summary • gwaspr

Creates a summary QTL plot of significant associations.

Usage

gg_QTL_Summary(
  myG,
  myQ,
  title = "Summary of QTL Results",
  lodFill = F,
  fillColor = "darkgreen",
  fillColor_low = "grey50",
  xLab = "Pos",
  facetLab = "lg"
)

Arguments

myG: Genetic map. Must contain the following 3 columns c("Marker","Chr","Pos").
myQ: Table of QTL results. Must contain the following 5 columns c("Trait","Chr","Pos","Pos_lo","Pos_hi","lod").
title: Custom title for the plot.
lodFill: Logical. If true, fill color will be a gradient based on lod values.
fillColor: Color for filling points.
fillColor_low: If lodfill = T, This will be the low end of the gradeint color scale for filling points.
xLab: Custom x lab.
facetLab: Custom label for facets.

Value

A QTL summary plot.