gg_Volcano — gg_Volcano • gwaspr

Creates a volcano plot.

Usage

gg_Volcano(
  folder = "GWAS_Results/",
  trait = list_Traits(folder)[1],
  title = trait,
  markers = NULL,
  labels = markers,
  models = c("MLM", "FarmCPU", "BLINK", "MLMM", "GLM", "CMLM", "SUPER"),
  skyline = "Kansas"
)

Arguments

folder: Folder containing GWAS results.
trait: The trait to read.
title: A title for the plot.
markers: Markers to be labelled.
labels: Labels to be used for markers.
models: Models to read.
skyline: Which skyline type to use. Can be "NYC" or "Kansas". If left NULL, it will use the highest P.value.

Value

A volcano plot.