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Creates a volcano plot.

Usage

gg_Volcano(
  folder = "GWAS_Results/",
  trait = list_Traits(folder)[1],
  title = trait,
  markers = NULL,
  labels = markers,
  models = c("MLM", "FarmCPU", "BLINK", "MLMM", "GLM", "CMLM", "SUPER"),
  skyline = NULL
)

Arguments

folder

Folder containing GWAS results.

trait

The trait to read.

title

A title for the plot.

markers

Markers to be labelled.

labels

Labels to be used for markers.

models

Models to read.

skyline

Which skyline type to use. Can be "NYC" or "Kansas". If left NULL, it will use the highest P.value.

Value

A volcano plot.