old_list_Top_Markers

Finds the markers with the highest association on each chromosome. Note: this function is meant for the old version of GAPIT.

Usage

old_list_Top_Markers(
  trait,
  model,
  folder = NULL,
  threshold = NULL,
  chroms = 1:50,
  n = 1
)

Arguments

trait

GWAS trait.

threshold

filters results with -log10(p) below threshold.

chroms

Chromosomes to include.

n

Number per chromosome.

method

GWAS method.

Value

Table of top results.