Calculates pairwise LD for markers within your myG genotype file.
Usage
calc_LD_Decay(xG = myG, outputFolder, markerNum = 1000)
Arguments
- xG
GWAS genotype object. Note: needs to be in hapmap format.
- outputFolder
Folder to place RData files into.
- markerNum
Number of markers to randomly select for each chromosome.
Value
RData files in the outputFolder location of LD data.