table_GWAS_Results — table_GWAS

Create a table of significant GWAS results.

Usage

table_GWAS_Region(
  folder = "GWAS_Results/",
  chr = 1,
  pos1 = 3.5e+08,
  pos2 = 3.7e+08,
  fnames = list_Result_Files(folder),
  threshold = 6,
  sug.threshold = NULL,
  nrowstoread = 1000,
  skyline = NULL,
  models = c("MLM", "MLMM", "FarmCPU", "BLINK", "GLM", "CMLM", "SUPER")
)

Arguments

folder: Folder containing GWAS results.
chr: Chromosome to plot.
pos1: Start position on chromosome.
pos2: End position on chromosome.
fnames: The files to read.
threshold: Significant threshold.
sug.threshold: Suggestive threshold.
nrowstoread: Number of rows to read.
skyline: Which skyline type to use. Can be "NYC" or "Kansas". If left NULL, it will use the highest P.value.
models: GWAS models to use.
useHBPvalues: Logical, if TRUE, H.B.P.Values will be uses.

Value

A table of significant GWAS results.